Package: IBRtools 0.1.3

IBRtools: Integrating Biomarker-Based Assessments and Radarchart Creation

Several functions to calculate two important indexes (IBR (Integrated Biomarker Response) and IBRv2 (Integrated Biological Response version 2)), it also calculates the standardized values for enzyme activity for each index, and it has a graphing function to perform radarplots that make great data visualization for this type of data. Beliaeff, B., & Burgeot, T. (2002). <https://pubmed.ncbi.nlm.nih.gov/12069320/>. Sanchez, W., Burgeot, T., & Porcher, J.-M. (2013).<doi:10.1007/s11356-012-1359-1>. Devin, S., Burgeot, T., Giambérini, L., Minguez, L., & Pain-Devin, S. (2014). <doi:10.1007/s11356-013-2169-9>. Minato N. (2022). <https://minato.sip21c.org/msb/>.

Authors:Anna Carolina Resende [aut, cre], Diego Mauro Carneiro Pereira [aut]

IBRtools_0.1.3.tar.gz
IBRtools_0.1.3.zip(r-4.5)IBRtools_0.1.3.zip(r-4.4)IBRtools_0.1.3.zip(r-4.3)
IBRtools_0.1.3.tgz(r-4.4-any)IBRtools_0.1.3.tgz(r-4.3-any)
IBRtools_0.1.3.tar.gz(r-4.5-noble)IBRtools_0.1.3.tar.gz(r-4.4-noble)
IBRtools_0.1.3.tgz(r-4.4-emscripten)IBRtools_0.1.3.tgz(r-4.3-emscripten)
IBRtools.pdf |IBRtools.html
IBRtools/json (API)
NEWS

# Install 'IBRtools' in R:
install.packages('IBRtools', repos = c('https://ecologicaltools.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ecologicaltools/ibrtools/issues

Datasets:
  • enzact - Biomarkers activity values with different treatments
  • enzact2 - Biomarkers activity values with different treatments
  • enzact_coef - Coefficient values for each biomarker within different treatments

On CRAN:

data-visualizationdevtoolsenzyme-activityibribrvindexes-ibrintegrated-biomarker-responseradarchartrstudio-cloudstarplot

3.18 score 3 stars 2 scripts 208 downloads 6 exports 29 dependencies

Last updated 1 years agofrom:1bd9e596eb. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 06 2024
R-4.5-winOKNov 06 2024
R-4.5-linuxOKNov 06 2024
R-4.4-winOKNov 06 2024
R-4.4-macOKNov 06 2024
R-4.3-winOKNov 06 2024
R-4.3-macOKNov 06 2024

Exports:ibr_chartibr_indexibr_stdibrv2_bdiibrv2_chartibrv2_index

Dependencies:adliftbinhfclicpp11data.tabledplyrEbayesThreshfansifmsbgenericsgluegtoolslifecyclemagrittrMASSpillarpkgconfigpurrrR6rlangstringistringrtibbletidyrtidyselectutf8vctrswavethreshwithr